STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vraR_1Response regulator protein VraR. (212 aa)    
Predicted Functional Partners:
liaS_1
Sensor histidine kinase LiaS.
 
 0.992
desK
Sensor histidine kinase DesK.
 0.938
degS_2
Signal transduction histidine-protein kinase/phosphatase DegS.
 
  0.892
liaS_2
Sensor histidine kinase LiaS.
 
  0.892
degS_1
Signal transduction histidine-protein kinase/phosphatase DegS.
 
  0.888
cheV
Chemotaxis protein CheV.
   
 0.763
gmr_1
Cyclic di-GMP phosphodiesterase Gmr.
  
 
 0.742
cph2
Phytochrome-like protein cph2.
  
 
 0.742
dosP
Oxygen sensor protein DosP.
  
 
 0.742
fliN
Flagellar motor switch protein FliN.
  
 
  0.575
Your Current Organism:
Lysinibacillus saudimassiliensis
NCBI taxonomy Id: 1461583
Other names: CSUR P1222, L. saudimassiliensis, Lysinibacillus sp. 13S34_air, strain 13S34_air
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.