STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hemAT_3Heme-based aerotactic transducer HemAT. (434 aa)    
Predicted Functional Partners:
cheV
Chemotaxis protein CheV.
 
 0.983
cheA
Chemotaxis protein CheA.
 
  0.951
cheR2
Chemotaxis protein methyltransferase Cher2.
 
 0.940
cheW
Chemotaxis protein CheW.
 
 0.931
cheB
Chemotaxis response regulator protein-glutamate methylesterase.
 
  0.888
cheD
Chemoreceptor glutamine deamidase CheD.
 
  0.848
opuCB
Glycine betaine/carnitine/choline transport system permease protein OpuCB.
   
 
  0.809
cph2
Phytochrome-like protein cph2.
 
 0.765
gmr_1
Cyclic di-GMP phosphodiesterase Gmr.
 
 0.762
dosP
Oxygen sensor protein DosP.
 
 0.746
Your Current Organism:
Lysinibacillus saudimassiliensis
NCBI taxonomy Id: 1461583
Other names: CSUR P1222, L. saudimassiliensis, Lysinibacillus sp. 13S34_air, strain 13S34_air
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.