STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KCV82629.1Hypothetical protein. (178 aa)    
Predicted Functional Partners:
rlmN
Radical SAM family protein; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family.
       0.735
KCV82543.1
Tim44 family protein.
  
     0.723
KCV82628.1
COG4448 L-asparaginase II.
       0.691
KCV83518.1
COG2919 Septum formation initiator.
  
     0.661
KCV81593.1
COG1846 Transcriptional regulators.
  
     0.654
KCV81929.1
Hypothetical protein.
  
     0.641
KCV82575.1
Hypothetical protein; COG3071 Uncharacterized enzyme of heme biosynthesis.
  
     0.624
KCV81626.1
COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase).
  
    0.584
KCV81730.1
COG4765 Uncharacterized protein conserved in bacteria.
  
     0.556
KCV83129.1
Heat shock protein DnaJ domain-containing protein; COG2214 DnaJ-class molecular chaperone.
  
     0.533
Your Current Organism:
Actibacterium atlanticum
NCBI taxonomy Id: 1461693
Other names: A. atlanticum, Actibacterium atlanticum Li et al. 2015, Actibacterium sp. 22II-S11-z10, LMG 27158, LMG:27158, MCCC 1A09298, strain 22II-S11-z10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.