STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KCV82120.1Phage/plasmid primase, P4 family protein; COG3378 Predicted ATPase. (457 aa)    
Predicted Functional Partners:
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
    
 0.881
KCV82121.1
Hypothetical protein.
       0.773
KCV82454.1
COG1961 Site-specific recombinases, DNA invertase Pin homologs.
 
  
 0.678
KCV82122.1
Hypothetical protein.
       0.562
KCV82457.1
DNA-cytosine methyltransferase; COG0270 Site-specific DNA methylase.
 
     0.496
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.473
KCV82028.1
COG0582 Integrase.
     
 0.461
KCV83548.1
Single-stranded DNA-binding protein (SSB); Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
  
    0.452
KCV83500.1
COG4653 Predicted phage phi-C31 gp36 major capsid-like protein.
  
  
 0.451
KCV82349.1
Helicase; COG0553 Superfamily II DNA/RNA helicases, SNF2 family.
     
 0.447
Your Current Organism:
Actibacterium atlanticum
NCBI taxonomy Id: 1461693
Other names: A. atlanticum, Actibacterium atlanticum Li et al. 2015, Actibacterium sp. 22II-S11-z10, LMG 27158, LMG:27158, MCCC 1A09298, strain 22II-S11-z10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.