STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KCV81685.1Extracellular solute-binding protein, family 7; Part of the tripartite ATP-independent periplasmic (TRAP) transport system. (363 aa)    
Predicted Functional Partners:
KCV81686.1
Tripartite ATP-independent periplasmic transporter DctQ component; COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
    0.927
KCV81687.1
TRAP dicarboxylate transporter subunit DctM; COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
 
    0.907
KCV82156.1
TRAP dicarboxylate transporter; COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
  
 0.827
KCV83441.1
TRAP transporter, subunit DctM; COG2233 Xanthine/uracil permeases.
 
    0.677
KCV81341.1
COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
  
     0.612
KCV81688.1
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
       0.525
KCV83439.1
Solute-binding family 7 protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
  
  
 
0.498
KCV81684.1
COG2303 Choline dehydrogenase and related flavoproteins.
       0.474
KCV81345.1
Hypothetical protein; COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
  
     0.445
KCV82155.1
TRAP dicarboxylate transporter subunit DctP; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
  
  
 
0.411
Your Current Organism:
Actibacterium atlanticum
NCBI taxonomy Id: 1461693
Other names: A. atlanticum, Actibacterium atlanticum Li et al. 2015, Actibacterium sp. 22II-S11-z10, LMG 27158, LMG:27158, MCCC 1A09298, strain 22II-S11-z10
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