STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KCV81449.1Putative hydrolase; COG3509 Poly(3-hydroxybutyrate) depolymerase. (305 aa)    
Predicted Functional Partners:
KCV81451.1
COG0845 Membrane-fusion protein.
 
     0.754
KCV81440.1
Putative NAD-dependent epimerase/dehydratase; COG0451 Nucleoside-diphosphate-sugar epimerases.
  
     0.738
KCV81436.1
Putative modular PKS system; COG3321 Polyketide synthase modules and related proteins; Belongs to the P-Pant transferase superfamily.
 
     0.721
KCV81438.1
Phosphodiesterase/nucleotide pyrophosphatase.
 
     0.705
KCV81435.1
Putative modular PKS system; COG2070 Dioxygenases related to 2-nitropropane dioxygenase.
 
     0.695
KCV81446.1
Hypothetical protein; COG0457 FOG: TPR repeat.
  
     0.690
KCV81447.1
Short-chain dehydrogenase/reductase SDR; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
 
     0.663
KCV81448.1
COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
       0.658
KCV82137.1
Putative polyhydroxybutyrate depolymerase; COG3509 Poly(3-hydroxybutyrate) depolymerase.
  
     0.651
KCV81443.1
Putative short-chain dehydrogenase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
  
     0.602
Your Current Organism:
Actibacterium atlanticum
NCBI taxonomy Id: 1461693
Other names: A. atlanticum, Actibacterium atlanticum Li et al. 2015, Actibacterium sp. 22II-S11-z10, LMG 27158, LMG:27158, MCCC 1A09298, strain 22II-S11-z10
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