STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KCV81291.1Hydrogenase accessory protein HypB; COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains. (493 aa)    
Predicted Functional Partners:
KCV81287.1
COG1773 Rubredoxin.
 
     0.909
KCV81275.1
Sensor protein; COG0642 Signal transduction histidine kinase.
 
 
 0.907
KCV81285.1
Hydrogenase-1 expression HyaE; COG3118 Thioredoxin domain-containing protein; Belongs to the HupG/HyaE family.
 
 
  0.907
KCV81286.1
HupH hydrogenase expression protein.
 
     0.907
KCV81284.1
COG0298 Hydrogenase maturation factor.
 
   0.902
KCV83732.1
Nitrogen regulation protein; COG3852 Signal transduction histidine kinase, nitrogen specific.
 0.844
KCV81283.1
Hydrogenase expression/formation protein; COG0680 Ni,Fe-hydrogenase maturation factor.
 
     0.843
KCV81292.1
Hydrogenase expression/formation protein HypC; COG0298 Hydrogenase maturation factor.
  
   0.797
KCV82464.1
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.784
KCV81290.1
Hydrogenase nickel incorporation protein HypB; COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase.
       0.773
Your Current Organism:
Actibacterium atlanticum
NCBI taxonomy Id: 1461693
Other names: A. atlanticum, Actibacterium atlanticum Li et al. 2015, Actibacterium sp. 22II-S11-z10, LMG 27158, LMG:27158, MCCC 1A09298, strain 22II-S11-z10
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.