STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KCV81134.1Hypothetical protein; COG0457 FOG: TPR repeat. (573 aa)    
Predicted Functional Partners:
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.749
KCV81135.1
Barstar (Barnase inhibitor) superfamily protein; COG2732 Barstar, RNAse (barnase) inhibitor.
       0.723
KCV83843.1
Cytochrome c-type biogenesis protein CycH; COG4235 Cytochrome c biogenesis factor.
 
 
   0.612
KCV81133.1
Electron transfer flavoprotein:ubiquinone oxidoreductase.
       0.593
KCV82575.1
Hypothetical protein; COG3071 Uncharacterized enzyme of heme biosynthesis.
  
     0.561
KCV82957.1
Hypothetical protein; COG0500 SAM-dependent methyltransferases.
  
     0.477
KCV83748.1
COG0789 Predicted transcriptional regulators.
  
     0.467
KCV80739.1
Hypothetical protein; COG0459 Chaperonin GroEL (HSP60 family).
  
     0.463
KCV80927.1
TPR repeat-containing protein; COG0457 FOG: TPR repeat.
 
   0.440
KCV80821.1
COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.
  
     0.440
Your Current Organism:
Actibacterium atlanticum
NCBI taxonomy Id: 1461693
Other names: A. atlanticum, Actibacterium atlanticum Li et al. 2015, Actibacterium sp. 22II-S11-z10, LMG 27158, LMG:27158, MCCC 1A09298, strain 22II-S11-z10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.