STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KCV81084.1Hypothetical protein. (102 aa)    
Predicted Functional Partners:
KCV81083.1
ErfK/YbiS/YcfS/YnhG family protein; COG1376 Uncharacterized protein conserved in bacteria.
  
     0.772
KCV80748.1
ErfK/YbiS/YcfS/YnhG family protein; COG1376 Uncharacterized protein conserved in bacteria.
  
     0.769
KCV81085.1
Hypothetical protein; COG4235 Cytochrome c biogenesis factor.
 
     0.719
KCV81090.1
COG0642 Signal transduction histidine kinase.
 
     0.683
KCV81092.1
Calcium-binding EF-hand-containing protein.
 
     0.594
KCV81094.1
Hypothetical protein; COG0607 Rhodanese-related sulfurtransferase.
 
     0.586
KCV81089.1
COG3462 Predicted membrane protein.
 
     0.549
KCV81091.1
Two component transcriptional regulator; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
 
     0.531
KCV81086.1
Cytochrome C biogenesis protein; Possible subunit of a heme lyase.
       0.522
KCV81087.1
Periplasmic protein thiol--disulfide oxidoreductase DsbE; COG0526 Thiol-disulfide isomerase and thioredoxins.
       0.522
Your Current Organism:
Actibacterium atlanticum
NCBI taxonomy Id: 1461693
Other names: A. atlanticum, Actibacterium atlanticum Li et al. 2015, Actibacterium sp. 22II-S11-z10, LMG 27158, LMG:27158, MCCC 1A09298, strain 22II-S11-z10
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