STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KCV80896.1Hypothetical protein. (345 aa)    
Predicted Functional Partners:
KCV80895.1
Hypothetical protein.
       0.786
KCV80897.1
COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit.
       0.727
KCV80894.1
COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit.
       0.689
KCV83396.1
Hypothetical protein.
   
 0.646
KCV83686.1
Hypothetical protein.
   
 0.646
KCV80776.1
COG2931 RTX toxins and related Ca2+-binding proteins.
  
 
  0.581
KCV83193.1
Hypothetical protein.
  
 
  0.535
KCV82262.1
Peptidoglycan-binding domain 1 protein; COG2951 Membrane-bound lytic murein transglycosylase B.
  
 
  0.530
KCV83501.1
Hypothetical protein.
  
  0.504
KCV81932.1
Hypothetical protein.
  
  0.504
Your Current Organism:
Actibacterium atlanticum
NCBI taxonomy Id: 1461693
Other names: A. atlanticum, Actibacterium atlanticum Li et al. 2015, Actibacterium sp. 22II-S11-z10, LMG 27158, LMG:27158, MCCC 1A09298, strain 22II-S11-z10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.