STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATO9_03440Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (471 aa)    
Predicted Functional Partners:
ATO9_04310
acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.624
ATO9_20575
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.624
ATO9_06400
Geranylgeranyl reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.603
ATO9_16285
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.599
ATO9_18555
2-methylcitrate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.599
ATO9_18975
MmgE/PrpD family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.599
ATO9_12640
Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.593
ATO9_03435
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.532
ATO9_03430
S-transferase; YghU; B2989; one of eight putative glutathione transferase proteins from E. coli; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.403
Your Current Organism:
Pseudooceanicola atlanticus
NCBI taxonomy Id: 1461694
Other names: KCTC 42004, LMG 27424, LMG:27424, MCCC 1A09160, Oceanicola sp. 22II-S11g, P. atlanticus, Pseudooceanicola atlanticus Lai et al. 2015, strain 22II-S11g
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.