STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATO9_03865C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (437 aa)    
Predicted Functional Partners:
ATO9_03875
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.859
ATO9_03870
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.846
ATO9_16300
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.739
ATO9_10025
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.737
ATO9_18875
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.720
ATO9_10745
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.700
ATO9_10670
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.679
ATO9_16100
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.621
ATO9_17130
C4-dicarboxylate ABC transporter substrate-binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
  
     0.604
ATO9_15015
ABC transporter substrate-binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
  
     0.570
Your Current Organism:
Pseudooceanicola atlanticus
NCBI taxonomy Id: 1461694
Other names: KCTC 42004, LMG 27424, LMG:27424, MCCC 1A09160, Oceanicola sp. 22II-S11g, P. atlanticus, Pseudooceanicola atlanticus Lai et al. 2015, strain 22II-S11g
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.