STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATO9_06930Alkane 1-monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (378 aa)    
Predicted Functional Partners:
ATO9_08160
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.745
ATO9_06925
Adenine glycosylase; Adenine glycosylase active on G-A mispairs.
       0.742
ATO9_08195
Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.712
ATO9_08155
Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.664
ATO9_11975
Capsule biosynthesis protein CapA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.658
ATO9_08635
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.617
ATO9_07400
Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.605
ATO9_05815
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.586
ATO9_07395
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.585
ATO9_06045
Capsule biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.584
Your Current Organism:
Pseudooceanicola atlanticus
NCBI taxonomy Id: 1461694
Other names: KCTC 42004, LMG 27424, LMG:27424, MCCC 1A09160, Oceanicola sp. 22II-S11g, P. atlanticus, Pseudooceanicola atlanticus Lai et al. 2015, strain 22II-S11g
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.