STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATO9_09885Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (160 aa)    
Predicted Functional Partners:
ATO9_09890
Aliphatic nitrilase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.907
ATO9_09880
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.843
ATO9_09905
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.837
ATO9_09900
Histone acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.820
ATO9_09910
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.801
ATO9_09915
FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.801
ATO9_08170
Preprotein translocase subunit TatB; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sulfur carrier protein TusA family.
    
 0.647
Your Current Organism:
Pseudooceanicola atlanticus
NCBI taxonomy Id: 1461694
Other names: KCTC 42004, LMG 27424, LMG:27424, MCCC 1A09160, Oceanicola sp. 22II-S11g, P. atlanticus, Pseudooceanicola atlanticus Lai et al. 2015, strain 22II-S11g
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