STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATO9_12560Glutamine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutamine synthetase family. (453 aa)    
Predicted Functional Partners:
ATO9_00280
Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.963
ATO9_12565
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.927
ATO9_12555
Glutamine amidotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.838
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
   
 
 0.812
ATO9_13535
Pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
   
 
 0.809
ATO9_00475
Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
  0.794
glmS
Glucosamine--fructose-6-phosphate aminotransferase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
 
 
 0.785
ATO9_00450
FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.764
ATO9_15785
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.759
ATO9_13195
Glutamine amidotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.744
Your Current Organism:
Pseudooceanicola atlanticus
NCBI taxonomy Id: 1461694
Other names: KCTC 42004, LMG 27424, LMG:27424, MCCC 1A09160, Oceanicola sp. 22II-S11g, P. atlanticus, Pseudooceanicola atlanticus Lai et al. 2015, strain 22II-S11g
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