STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATO9_17230ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (560 aa)    
Predicted Functional Partners:
ATO9_17235
Nitrate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.993
ATO9_17210
Nitrate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
 
  
  0.990
ATO9_17245
Nitrate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.975
ATO9_17240
Nitrate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.972
ATO9_08820
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.
  
 
0.944
ATO9_09545
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.934
ATO9_17220
Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
 
     0.912
ATO9_17205
Glycosyl transferase family 3; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.900
ATO9_17215
tRNA-(guanine-N1)-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.877
ATO9_17225
Hemin receptor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the globin family.
       0.773
Your Current Organism:
Pseudooceanicola atlanticus
NCBI taxonomy Id: 1461694
Other names: KCTC 42004, LMG 27424, LMG:27424, MCCC 1A09160, Oceanicola sp. 22II-S11g, P. atlanticus, Pseudooceanicola atlanticus Lai et al. 2015, strain 22II-S11g
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