ATO9_17765 protein (Pseudooceanicola atlanticus)

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Known Interactions

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Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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protein homology

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[Homology]

Score

ATO9_17765

Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (339 aa)

Predicted Functional Partners:

ATO9_17755

0.999

ATO9_17760

0.999

ATO9_17750

0.994

ATO9_17075

0.961

ATO9_18130

0.855

ATO9_16720

0.811

ATO9_19645

0.801

ATO9_17070

0.783

ATO9_23645

0.782

ATO9_12545

0.739

Your Current Organism:

Pseudooceanicola atlanticus

NCBI taxonomy Id: 1461694
Other names: KCTC 42004, LMG 27424, LMG:27424, MCCC 1A09160, Oceanicola sp. 22II-S11g, P. atlanticus, Pseudooceanicola atlanticus Lai et al. 2015, strain 22II-S11g

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Browse interactions in tabular form:

page 1 of 3

Network Stats

number of nodes:

11

number of edges:

14

average node degree:

2.55

avg. local clustering coefficient:

0.917

expected number of edges:

19

PPI enrichment p-value:

0.912

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
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Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0009103

Lipopolysaccharide biosynthetic process

6 of 22

2.1

3.8

5.20e-09

GO:1903509

Liposaccharide metabolic process

7 of 41

1.89

3.56

2.00e-09

GO:0016051

Carbohydrate biosynthetic process

8 of 108

1.53

2.57

5.20e-09

GO:0008610

Lipid biosynthetic process

7 of 110

1.46

2.14

1.83e-07

GO:0005975

Carbohydrate metabolic process

9 of 211

1.29

1.92

6.88e-09

(more ...)

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0008690

3-deoxy-manno-octulosonate cytidylyltransferase activity

2 of 2

2.66

0.93

0.0210

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:3687

Lipid A biosynthesis, and Lipopolysaccharide biosynthesis

7 of 15

2.33

5.44

3.51e-12

CL:3632

Mixed, incl. Liposaccharide metabolic process, and TonB-dependent receptor-like, beta-barrel

8 of 45

1.91

4.29

7.13e-12

CL:3689

Lipopolysaccharide biosynthesis, and Bacterial lipid A biosynthesis acyltransferase

3 of 5

2.44

2.11

0.00011

CL:3972

Mixed, incl. Cytidylyltransferase, and Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain superfamily

2 of 5

2.26

0.94

0.0187

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00540

Lipopolysaccharide biosynthesis

7 of 42

1.88

3.81

2.15e-10

map01100

Metabolic pathways

10 of 1719

0.43

0.32

0.0107

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0448

Lipopolysaccharide biosynthesis

4 of 4

2.66

3.58

1.91e-07

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR003329

Acylneuraminate cytidylyltransferase

3 of 3

2.66

1.93

0.00028

IPR004528

3-deoxy-D-manno-octulosonate cytidylyltransferase

2 of 2

2.66

0.9

0.0238

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node1	node2	node1 annotation	node2 annotation	score
ATO9_12545	ATO9_17750	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.985
ATO9_12545	ATO9_17755	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.722
ATO9_12545	ATO9_17760	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.884
ATO9_12545	ATO9_17765	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.739
ATO9_16720	ATO9_17765	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.811
ATO9_16720	ATO9_18130	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ATO9_16720	ATO9_19645	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ATO9_16720	ATO9_23645	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ATO9_17070	ATO9_17075	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.994
ATO9_17070	ATO9_17750	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.984
ATO9_17070	ATO9_17755	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.853
ATO9_17070	ATO9_17760	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.814
ATO9_17070	ATO9_17765	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.783
ATO9_17075	ATO9_17070	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.994
ATO9_17075	ATO9_17750	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
ATO9_17075	ATO9_17755	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.957
ATO9_17075	ATO9_17760	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.815
ATO9_17075	ATO9_17765	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.961
ATO9_17750	ATO9_12545	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.985
ATO9_17750	ATO9_17070	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.984