STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATO9_21530Lipid kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (355 aa)    
Predicted Functional Partners:
ATO9_21535
Lipid kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.947
ATO9_11175
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.759
ATO9_11725
Catalyzes the hydrolysis of allophanate; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.741
ATO9_17235
Nitrate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.627
ATO9_18130
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.606
ATO9_21545
Agmatinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the arginase family.
 
     0.582
ATO9_14315
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.577
ATO9_08490
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.568
ATO9_03695
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.550
ATO9_04970
Nitrate ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.536
Your Current Organism:
Pseudooceanicola atlanticus
NCBI taxonomy Id: 1461694
Other names: KCTC 42004, LMG 27424, LMG:27424, MCCC 1A09160, Oceanicola sp. 22II-S11g, P. atlanticus, Pseudooceanicola atlanticus Lai et al. 2015, strain 22II-S11g
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.