STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATO9_22295Carnitine operon oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (90 aa)    
Predicted Functional Partners:
ATO9_22290
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.973
ATO9_05420
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.769
ATO9_01415
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.554
ATO9_22285
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.460
ATO9_22280
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.452
ATO9_23600
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.429
Your Current Organism:
Pseudooceanicola atlanticus
NCBI taxonomy Id: 1461694
Other names: KCTC 42004, LMG 27424, LMG:27424, MCCC 1A09160, Oceanicola sp. 22II-S11g, P. atlanticus, Pseudooceanicola atlanticus Lai et al. 2015, strain 22II-S11g
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.