STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATO9_22340VIRB2 type IV secretion; Derived by automated computational analysis using gene prediction method: Protein Homology. (96 aa)    
Predicted Functional Partners:
ATO9_22350
Type IV secretion system protein B4; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.968
ATO9_22380
Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.953
ATO9_22345
Type IV secretion protein VirB3; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.949
ATO9_22365
Conjugal transfer protein TraF; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.947
ATO9_22375
Conjugal transfer protein TrbG; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.943
ATO9_22370
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.941
ATO9_22330
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.940
ATO9_22360
Lytic transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.938
ATO9_22395
Conjugal transfer protein TrbL; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.935
ATO9_22385
Type II secretion system protein E; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.889
Your Current Organism:
Pseudooceanicola atlanticus
NCBI taxonomy Id: 1461694
Other names: KCTC 42004, LMG 27424, LMG:27424, MCCC 1A09160, Oceanicola sp. 22II-S11g, P. atlanticus, Pseudooceanicola atlanticus Lai et al. 2015, strain 22II-S11g
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.