STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATO9_23065Peptidase M23; Derived by automated computational analysis using gene prediction method: Protein Homology. (457 aa)    
Predicted Functional Partners:
ATO9_23055
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.903
ATO9_23060
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.892
ATO9_23045
Disulfide bond formation protein DsbB; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DsbB family.
 
     0.877
ATO9_23050
DSBA oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.862
ATO9_23070
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.819
lspA-2
Peptidase A8; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.
 
     0.807
ATO9_23040
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.772
ATO9_23075
Protein gufA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.718
ATO9_23485
Disulfide bond formation protein DsbB; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DsbB family.
 
     0.707
lnt
Acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily.
 
     0.703
Your Current Organism:
Pseudooceanicola atlanticus
NCBI taxonomy Id: 1461694
Other names: KCTC 42004, LMG 27424, LMG:27424, MCCC 1A09160, Oceanicola sp. 22II-S11g, P. atlanticus, Pseudooceanicola atlanticus Lai et al. 2015, strain 22II-S11g
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.