STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDQ38024.1Hypothetical protein. (213 aa)    
Predicted Functional Partners:
gltA
Glutamate synthase [NADPH] large chain.
   
 
 0.685
CDQ38023.1
Hypothetical protein.
       0.524
aroF_1
Phospho-2-dehydro-3-deoxyheptonate aldolase.
    
  0.461
aroF_2
Phospho-2-dehydro-3-deoxyheptonate aldolase.
    
  0.461
CDQ38571.1
Formamidase.
  
 
  0.415
CDQ38578.1
Acetyltransferase (GNAT) family protein.
  
 
  0.415
Your Current Organism:
Virgibacillus massiliensis
NCBI taxonomy Id: 1462526
Other names: CSUR P971, DSM 28587, Virgibacillus sp. Vm-5, strain Vm-5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.