STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lytC_1N-acetylmuramoyl-L-alanine amidase LytC precursor. (373 aa)    
Predicted Functional Partners:
cwlC_3
Sporulation-specific N-acetylmuramoyl-L-alanine amidase.
 
0.909
cwlC_1
Sporulation-specific N-acetylmuramoyl-L-alanine amidase.
 
0.906
cwlC_2
Sporulation-specific N-acetylmuramoyl-L-alanine amidase.
 
0.903
cinA
Exported protein 10; Belongs to the CinA family.
 
  
  0.859
guaA
GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP.
    
  0.794
CDQ39558.1
Phage tail protein.
   
 
 0.764
guaB
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
  
 
  0.762
prtP
PII-type proteinase precursor; Belongs to the peptidase S8 family.
  
 
  0.758
lytE_1
Putative peptidoglycan endopeptidase LytE precursor.
  
 
 0.722
lytE_2
Putative peptidoglycan endopeptidase LytE precursor.
  
 
 0.722
Your Current Organism:
Virgibacillus massiliensis
NCBI taxonomy Id: 1462526
Other names: CSUR P971, DSM 28587, Virgibacillus sp. Vm-5, strain Vm-5
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