STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
draGADP-ribosyl-[dinitrogen reductase] glycohydrolase. (341 aa)    
Predicted Functional Partners:
ymdB
O-acetyl-ADP-ribose deacetylase.
   
 0.861
glnB
Nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
    
 
 0.848
CDQ39546.1
Phage portal protein, HK97 family.
    
 
 0.816
c3
Mono-ADP-ribosyltransferase C3 precursor.
       0.768
CDQ40390.1
Hypothetical protein.
       0.768
CDQ40391.1
Hypothetical protein.
       0.768
CDQ40392.1
Virulence factor EsxB.
       0.768
CDQ40393.1
Hypothetical protein.
       0.666
eccCa1
Type VII secretion system protein EccCa1.
       0.636
CDQ40395.1
Type VII secretion protein EssB.
       0.520
Your Current Organism:
Virgibacillus massiliensis
NCBI taxonomy Id: 1462526
Other names: CSUR P971, DSM 28587, Virgibacillus sp. Vm-5, strain Vm-5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.