STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydaF_6Putative ribosomal N-acetyltransferase YdaF. (187 aa)    
Predicted Functional Partners:
CDQ41644.1
Hypothetical protein.
 
     0.779
speG_3
Spermidine N(1)-acetyltransferase.
  
     0.708
gltA
Glutamate synthase [NADPH] large chain.
   
 
 0.685
ydaF_5
Putative ribosomal N-acetyltransferase YdaF.
  
     0.679
codB_2
Cytosine permease.
  
    0.469
CDQ41647.1
Hypothetical protein.
       0.468
apc3
Acetophenone carboxylase gamma subunit.
       0.468
aroF_1
Phospho-2-dehydro-3-deoxyheptonate aldolase.
    
  0.461
aroF_2
Phospho-2-dehydro-3-deoxyheptonate aldolase.
    
  0.461
icaR
Intercellular adhesion protein R.
       0.422
Your Current Organism:
Virgibacillus massiliensis
NCBI taxonomy Id: 1462526
Other names: CSUR P971, DSM 28587, Virgibacillus sp. Vm-5, strain Vm-5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.