STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
acdA_7Acyl-CoA dehydrogenase. (402 aa)    
Predicted Functional Partners:
fadA
3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
   
  0.934
paaJ
3-oxoadipyl-CoA/3-oxo-5,6-dehydrosuberyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
   
  0.934
etfA
Electron transfer flavoprotein large subunit.
 
 0.932
etfB
Electron transfer flavoprotein small subunit.
 
 
 0.910
fadN
Putative 3-hydroxyacyl-CoA dehydrogenase.
  
 0.909
bbsF_3
Succinyl-CoA:(R)-benzylsuccinate CoA-transferase subunit BbsF; Belongs to the CoA-transferase III family.
 
  0.787
paaF_2
2,3-dehydroadipyl-CoA hydratase.
  
  0.659
CDQ39192.1
Phosphotransferase enzyme family protein.
 
 
  0.653
fadB_2
Putative enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
  0.621
ribD_1
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
   
 0.618
Your Current Organism:
Virgibacillus massiliensis
NCBI taxonomy Id: 1462526
Other names: CSUR P971, DSM 28587, Virgibacillus sp. Vm-5, strain Vm-5
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