STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A6V36_09150Porin. (389 aa)    
Predicted Functional Partners:
A6V36_01550
Thiol reductase thioredoxin.
  
 
   0.749
A6V36_07730
UDP phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase.
  
     0.734
A6V36_09935
Uncharacterized protein.
  
     0.731
A6V36_01515
Uncharacterized protein.
  
     0.727
A6V36_29510
NlpB/DapX lipoprotein domain protein.
  
     0.712
A6V36_30935
Regulator.
  
     0.697
A6V36_31040
Uncharacterized protein.
  
     0.686
A6V36_22600
Cell division protein ZipA; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. Belongs to the ZipA family.
  
     0.685
A6V36_10230
Uncharacterized protein.
  
     0.676
A6V36_14595
Uncharacterized protein.
  
     0.673
Your Current Organism:
Paraburkholderia ginsengiterrae
NCBI taxonomy Id: 1462993
Other names: Burkholderia ginsengiterrae, Burkholderia ginsengiterrae Farh et al. 2015, Burkholderia panaciterrae, Burkholderia panaciterrae Farh et al. 2015, Burkholderia sp. DCY85, Burkholderia sp. DCY85-1, JCM 19888, JCM 19889 [[Paraburkholderia panaciterrae]], KCTC 42054, KCTC 42055 [[Paraburkholderia panaciterrae]], P. ginsengiterrae, Paraburkholderia ginsengiterrae (Farh et al. 2015) Dobritsa and Samadpour 2016 emend. Dobritsa et al. 2016, Paraburkholderia panaciterrae, Paraburkholderia panaciterrae (Farh et al. 2015) Dobritsa and Samadpour 2016, strain DCY85, strain DCY85-1 [[Paraburkholderia panaciterrae]]
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