STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pqqBCoenzyme PQQ synthesis protein B; May be involved in the transport of PQQ or its precursor to the periplasm; Belongs to the PqqB family. (307 aa)    
Predicted Functional Partners:
pqqC
Pyrroloquinoline-quinone synthase; Ring cyclization and eight-electron oxidation of 3a-(2-amino- 2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline-7,9- dicarboxylic-acid to PQQ.
  
 0.997
A6V36_28905
Pyrroloquinoline quinone biosynthesis protein PqqD.
 
  
 0.994
pqqE
PqqA peptide cyclase; Catalyzes the cross-linking of a glutamate residue and a tyrosine residue in the PqqA protein as part of the biosynthesis of pyrroloquinoline quinone (PQQ).
 
  
 0.976
A6V36_28920
Pyrrolo-quinoline quinone.
 
  
 0.863
A6V36_11735
Phosphonate metabolism protein PhnM.
  
 
 0.769
A6V36_11710
Phosphonate C-P lyase system protein PhnH.
  
 
 0.699
A6V36_11720
Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase; Catalyzes the breakage of the C-P bond in alpha-D-ribose 1- methylphosphonate 5-phosphate (PRPn) forming alpha-D-ribose. Belongs to the PhnJ family.
  
 
 0.698
phnN
Ribose 1,5-bisphosphate phosphokinase PhnN; Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP).
  
 
 0.694
A6V36_11715
Carbon-phosphorus lyase complex subunit PhnI.
  
 
 0.693
lipA
Lipoyl synthase; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.
    
 0.628
Your Current Organism:
Paraburkholderia ginsengiterrae
NCBI taxonomy Id: 1462993
Other names: Burkholderia ginsengiterrae, Burkholderia ginsengiterrae Farh et al. 2015, Burkholderia panaciterrae, Burkholderia panaciterrae Farh et al. 2015, Burkholderia sp. DCY85, Burkholderia sp. DCY85-1, JCM 19888, JCM 19889 [[Paraburkholderia panaciterrae]], KCTC 42054, KCTC 42055 [[Paraburkholderia panaciterrae]], P. ginsengiterrae, Paraburkholderia ginsengiterrae (Farh et al. 2015) Dobritsa and Samadpour 2016 emend. Dobritsa et al. 2016, Paraburkholderia panaciterrae, Paraburkholderia panaciterrae (Farh et al. 2015) Dobritsa and Samadpour 2016, strain DCY85, strain DCY85-1 [[Paraburkholderia panaciterrae]]
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.