STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A6V36_35635Peptidase. (290 aa)    
Predicted Functional Partners:
A6V36_35625
Alpha-E domain-containing protein.
 
    0.911
A6V36_35630
Transglutaminase.
 
    0.899
A6V36_35620
Uncharacterized protein.
 
  
 0.873
A6V36_25950
Alpha-E domain-containing protein.
 
  
 0.861
A6V36_32280
Transglutaminase.
 
    0.631
A6V36_25945
Transglutaminase.
 
    0.589
A6V36_25955
IMP dehydrogenase.
 
    0.490
Your Current Organism:
Paraburkholderia ginsengiterrae
NCBI taxonomy Id: 1462993
Other names: Burkholderia ginsengiterrae, Burkholderia ginsengiterrae Farh et al. 2015, Burkholderia panaciterrae, Burkholderia panaciterrae Farh et al. 2015, Burkholderia sp. DCY85, Burkholderia sp. DCY85-1, JCM 19888, JCM 19889 [[Paraburkholderia panaciterrae]], KCTC 42054, KCTC 42055 [[Paraburkholderia panaciterrae]], P. ginsengiterrae, Paraburkholderia ginsengiterrae (Farh et al. 2015) Dobritsa and Samadpour 2016 emend. Dobritsa et al. 2016, Paraburkholderia panaciterrae, Paraburkholderia panaciterrae (Farh et al. 2015) Dobritsa and Samadpour 2016, strain DCY85, strain DCY85-1 [[Paraburkholderia panaciterrae]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.