Known metabolic pathways, protein complexes, signal transduction pathways, etc ... from curated databases.
loading ...
currently showing
Fusion
Genes that are sometimes fused into single open reading frames.
loading ...
currently showing
Textmining
Automated, unsupervised textmining - searching for proteins that are frequently mentioned together.
loading ...
currently showing
Coexpression
Proteins whose genes are observed to be correlated in expression, across a large number of experiments.
STRING allows inspection of the interaction evidence for any given network. Choose any of the viewers above (disabled if not applicable in your network).
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
Node Content
empty nodes: proteins of unknown 3D structure
filled nodes: a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A6V36_37035
Transcriptional regulator. (71 aa)
Predicted Functional Partners:
A6V36_37040
Indole acetimide hydrolase.
0.486
Your Current Organism:
Paraburkholderia ginsengiterrae
NCBI taxonomy Id: 1462993 Other names: Burkholderia ginsengiterrae, Burkholderia ginsengiterrae Farh et al. 2015, Burkholderia panaciterrae, Burkholderia panaciterrae Farh et al. 2015, Burkholderia sp. DCY85, Burkholderia sp. DCY85-1, JCM 19888, JCM 19889 [[Paraburkholderia panaciterrae]], KCTC 42054, KCTC 42055 [[Paraburkholderia panaciterrae]], P. ginsengiterrae, Paraburkholderia ginsengiterrae (Farh et al. 2015) Dobritsa and Samadpour 2016 emend. Dobritsa et al. 2016, Paraburkholderia panaciterrae, Paraburkholderia panaciterrae (Farh et al. 2015) Dobritsa and Samadpour 2016, strain DCY85, strain DCY85-1 [[Paraburkholderia panaciterrae]]