STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDC75862.1Spore germination protein D. (195 aa)    
Predicted Functional Partners:
SDC19869.1
Prespore-specific regulator.
  
     0.774
SDC34683.1
Transcription factor, RsfA family.
  
     0.774
SDC44297.1
Spore coat protein E.
  
     0.774
SDC60358.1
Outer membrane lipoprotein-sorting protein.
  
     0.773
SDB83117.1
Protein YqhG of unknown function.
  
     0.772
SDC04583.1
Stage III sporulation protein AH.
  
     0.771
SDB82069.1
Putative amidase domain-containing protein.
  
     0.764
SDB81406.1
Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain.
  
     0.764
SDB85899.1
Spore germination protein Q; Essential for the localization of CwlJ in the spore coat and for spore germination triggered by calcium and dipicolinic acid (DPA). Its assembly into the spore coat is dependent on the coat morphogenetic proteins CotE and SpoIVA.
  
     0.760
SDC60289.1
CopG family transcriptional regulator / antitoxin EndoAI.
  
     0.753
Your Current Organism:
Bacillus lonarensis
NCBI taxonomy Id: 1464122
Other names: B. lonarensis, Bacillus lonarensis Reddy et al. 2015, Bacillus sp. 25nlg, CGMCC 1.12817, KCTC 33413, LMG 27974, LMG:27974, strain 25nlg
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