Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SER45924.1 | mprF | SAMN05444126_101161 | SAMN05444126_10963 | Protein of unknown function. | Hypothetical protein; Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms. | 0.660 |
| SER86665.1 | mprF | SAMN05444126_10789 | SAMN05444126_10963 | iron(III) transport system permease protein. | Hypothetical protein; Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms. | 0.506 |
| SER89664.1 | SES35687.1 | SAMN05444126_10858 | SAMN05444126_14111 | Lipid kinase, YegS/Rv2252/BmrU family. | Glycosyl transferase family 2. | 0.675 |
| SER89664.1 | mprF | SAMN05444126_10858 | SAMN05444126_10963 | Lipid kinase, YegS/Rv2252/BmrU family. | Hypothetical protein; Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms. | 0.531 |
| SER94193.1 | SER94214.1 | SAMN05444126_10964 | SAMN05444126_10965 | Hypothetical protein. | Ferrous iron transport protein B. | 0.793 |
| SER94193.1 | SER94235.1 | SAMN05444126_10964 | SAMN05444126_10966 | Hypothetical protein. | Ferrous iron transport protein A. | 0.792 |
| SER94193.1 | ddl | SAMN05444126_10964 | SAMN05444126_10962 | Hypothetical protein. | D-alanine-D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family. | 0.508 |
| SER94193.1 | mprF | SAMN05444126_10964 | SAMN05444126_10963 | Hypothetical protein. | Hypothetical protein; Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms. | 0.802 |
| SER94214.1 | SER94193.1 | SAMN05444126_10965 | SAMN05444126_10964 | Ferrous iron transport protein B. | Hypothetical protein. | 0.793 |
| SER94214.1 | SER94235.1 | SAMN05444126_10965 | SAMN05444126_10966 | Ferrous iron transport protein B. | Ferrous iron transport protein A. | 0.953 |
| SER94214.1 | ddl | SAMN05444126_10965 | SAMN05444126_10962 | Ferrous iron transport protein B. | D-alanine-D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family. | 0.523 |
| SER94214.1 | mprF | SAMN05444126_10965 | SAMN05444126_10963 | Ferrous iron transport protein B. | Hypothetical protein; Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms. | 0.929 |
| SER94235.1 | SER94193.1 | SAMN05444126_10966 | SAMN05444126_10964 | Ferrous iron transport protein A. | Hypothetical protein. | 0.792 |
| SER94235.1 | SER94214.1 | SAMN05444126_10966 | SAMN05444126_10965 | Ferrous iron transport protein A. | Ferrous iron transport protein B. | 0.953 |
| SER94235.1 | ddl | SAMN05444126_10966 | SAMN05444126_10962 | Ferrous iron transport protein A. | D-alanine-D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family. | 0.508 |
| SER94235.1 | mprF | SAMN05444126_10966 | SAMN05444126_10963 | Ferrous iron transport protein A. | Hypothetical protein; Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms. | 0.794 |
| SES25776.1 | SES35687.1 | SAMN05444126_12429 | SAMN05444126_14111 | Diacylglycerol kinase (ATP). | Glycosyl transferase family 2. | 0.675 |
| SES25776.1 | mprF | SAMN05444126_12429 | SAMN05444126_10963 | Diacylglycerol kinase (ATP). | Hypothetical protein; Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms. | 0.531 |
| SES26825.1 | mprF | SAMN05444126_12533 | SAMN05444126_10963 | Phosphinothricin acetyltransferase. | Hypothetical protein; Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms. | 0.606 |
| SES35687.1 | SER89664.1 | SAMN05444126_14111 | SAMN05444126_10858 | Glycosyl transferase family 2. | Lipid kinase, YegS/Rv2252/BmrU family. | 0.675 |
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