STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KUM67552.1Phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (744 aa)    
Predicted Functional Partners:
KUM67568.1
Phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
0.975
KUM76980.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.961
KUM71587.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.957
KUM80357.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.942
KUM72319.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
0.900
KUM73215.1
Aminotransferase class I/II; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
0.896
gatC
glutamyl-tRNA amidotransferase; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family.
       0.725
gatA
glutamyl-tRNA amidotransferase; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).
       0.725
KUM67555.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.725
ligA
Aromatic ring-opening dioxygenase LigA; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily.
       0.720
Your Current Organism:
Streptomyces curacoi
NCBI taxonomy Id: 146536
Other names: ATCC 13385, ATCC 19745, CBS 484.68, DSM 40107, IFO 12761, ISP 5107, JCM 4219, JCM 4573, NBRC 12761, NRRL B-2901, NRRL-ISP 5107, S. curacoi, SC 3604, Streptomyces curacoensis, UNIQEM 132, strain 5828
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.