STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP56723.1Peptidoglycan/xylan/chitin deacetylase, PgdA/CDA1 family. (842 aa)    
Predicted Functional Partners:
SFQ21177.1
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat.
     0.834
SFP93031.1
Endoglucanase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
     
 0.758
SFP99868.1
Beta-glucosidase; Belongs to the glycosyl hydrolase 3 family.
     
 0.615
SFQ51262.1
Beta-glucosidase.
     
 0.615
SFP56752.1
BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase.
       0.608
SFP60202.1
Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase.
  
 
 0.540
SFP94356.1
Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase.
  
 
 0.540
SFP94420.1
Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase.
  
 
 0.540
SFP94592.1
Hypothetical protein.
  
 
 0.540
SFQ11853.1
Glycosyl transferase family 2.
  
 
 0.540
Your Current Organism:
Parafilimonas terrae
NCBI taxonomy Id: 1465490
Other names: DSM 28286, Filimonas sp. 5GHs7-2, KACC 17343, P. terrae, Parafilimonas terrae Kim et al. 2014, strain 5GHs7-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.