STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP57535.1Octaprenyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family. (320 aa)    
Predicted Functional Partners:
SFQ24156.1
Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
 
 
 0.960
SFQ32743.1
Phytoene/squalene synthetase.
  
 0.935
SFP56969.1
Geranylgeranyl diphosphate synthase, type II; Belongs to the FPP/GGPP synthase family.
  
  
 
0.893
SFQ53994.1
4-hydroxybenzoate polyprenyltransferase; Belongs to the UbiA prenyltransferase family.
 
 
 0.886
SFP57508.1
Exonuclease RecJ.
       0.797
SFP65174.1
4-hydroxybenzoate polyprenyltransferase.
  
 
 0.793
SFQ29927.1
1,4-dihydroxy-2-naphthoate octaprenyltransferase.
    
 0.682
SFP57483.1
Glycosyltransferase involved in cell wall bisynthesis.
       0.677
menG
Demethylmenaquinone methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2).
 
 
 0.645
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
 
 
 0.637
Your Current Organism:
Parafilimonas terrae
NCBI taxonomy Id: 1465490
Other names: DSM 28286, Filimonas sp. 5GHs7-2, KACC 17343, P. terrae, Parafilimonas terrae Kim et al. 2014, strain 5GHs7-2
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