STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP65368.1Outer membrane transport energization protein ExbD. (132 aa)    
Predicted Functional Partners:
SFP65394.1
Outer membrane transport energization protein ExbB.
 
 
 0.982
SFP63917.1
Outer membrane transport energization protein ExbB.
 
 
 0.898
SFP63849.1
Outer membrane transport energization protein TonB.
  
 
 0.725
infB
Bacterial translation initiation factor 2 (bIF-2); One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
  
 
 0.722
SFQ00235.1
Outer membrane transport energization protein TonB.
  
 
 0.709
SFP65325.1
Hypothetical protein.
       0.682
SFP65344.1
Hypothetical protein.
       0.682
SFP90603.1
Tetratricopeptide repeat-containing protein.
 
  
 0.678
SFP89687.1
TonB family C-terminal domain-containing protein.
  
 
 0.650
SFP66766.1
Antitoxin component YwqK of the YwqJK toxin-antitoxin module.
   
 
 0.648
Your Current Organism:
Parafilimonas terrae
NCBI taxonomy Id: 1465490
Other names: DSM 28286, Filimonas sp. 5GHs7-2, KACC 17343, P. terrae, Parafilimonas terrae Kim et al. 2014, strain 5GHs7-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.