STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP53169.1Alpha-L-arabinofuranosidase. (660 aa)    
Predicted Functional Partners:
SFP53191.1
Hypothetical protein.
 
     0.867
SFQ24912.1
Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.
 
  
  0.715
SFP53145.1
Endo-1,4-beta-xylanase.
 
  
 0.706
SFQ17708.1
Hypothetical protein.
  
     0.649
SFP53122.1
Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
  
  0.641
SFQ23506.1
Arabinan endo-1,5-alpha-L-arabinosidase; Belongs to the glycosyl hydrolase 43 family.
 
  
  0.627
SFP84733.1
Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.
  
  0.604
SFQ23541.1
Beta-xylosidase, GH43 family; Belongs to the glycosyl hydrolase 43 family.
   
 0.588
SFQ16488.1
Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
   
    0.573
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
  
 0.542
Your Current Organism:
Parafilimonas terrae
NCBI taxonomy Id: 1465490
Other names: DSM 28286, Filimonas sp. 5GHs7-2, KACC 17343, P. terrae, Parafilimonas terrae Kim et al. 2014, strain 5GHs7-2
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