STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ20647.1PASTA domain, binds beta-lactams. (274 aa)    
Predicted Functional Partners:
SFQ40980.1
Hypothetical protein.
   
 
 0.872
SFQ41028.1
Serine/threonine protein phosphatase PrpC.
 
 
 0.817
ddl
D-alanine-D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
    
 0.811
SFQ20621.1
Rhodanese-related sulfurtransferase.
       0.788
SFP93047.1
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
 
 
 0.723
SFQ37528.1
Protein of unknown function.
  
     0.582
SFQ17188.1
Protein of unknown function.
  
     0.569
SFQ03944.1
Penicillin-binding protein 1A.
  
  
 0.567
SFQ41013.1
Cell division protein FtsW, lipid II flippase; Belongs to the SEDS family.
  
 
 0.546
SFQ53212.1
Cell division protein FtsI (penicillin-binding protein 3).
 
  
 0.525
Your Current Organism:
Parafilimonas terrae
NCBI taxonomy Id: 1465490
Other names: DSM 28286, Filimonas sp. 5GHs7-2, KACC 17343, P. terrae, Parafilimonas terrae Kim et al. 2014, strain 5GHs7-2
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