STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ21226.1TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region. (306 aa)    
Predicted Functional Partners:
SFQ21212.1
TonB-linked outer membrane protein, SusC/RagA family.
     0.990
SFQ21197.1
Starch-binding associating with outer membrane.
 
   0.938
SFP81987.1
Starch-binding associating with outer membrane.
 
 
   0.830
SFP81157.1
Starch-binding associating with outer membrane.
 
 
   0.805
SFP59797.1
Starch-binding associating with outer membrane.
 
 
   0.787
SFQ34921.1
Starch-binding associating with outer membrane.
 
 
   0.749
SFP59724.1
Starch-binding associating with outer membrane.
 
 
   0.716
SFQ41468.1
Starch-binding associating with outer membrane.
  
 
   0.692
SFP89687.1
TonB family C-terminal domain-containing protein.
  
   0.691
SFQ55303.1
CarboxypepD_reg-like domain-containing protein.
  
     0.681
Your Current Organism:
Parafilimonas terrae
NCBI taxonomy Id: 1465490
Other names: DSM 28286, Filimonas sp. 5GHs7-2, KACC 17343, P. terrae, Parafilimonas terrae Kim et al. 2014, strain 5GHs7-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.