STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ37834.1Regulator of RNase E activity RraA. (226 aa)    
Predicted Functional Partners:
SFQ37907.1
Hypothetical protein.
 
  
 0.897
SFQ37815.1
N-acetylglucosaminyl deacetylase, LmbE family.
 
  
 0.872
SFQ37881.1
L-alanine-DL-glutamate epimerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
 
  0.871
SFQ37797.1
Hypothetical protein.
 
     0.812
SFQ37888.1
L-iditol 2-dehydrogenase/threonine 3-dehydrogenase/L-gulonate 5-dehydrogenase.
    
  0.689
SFQ37859.1
L-ascorbate 6-phosphate lactonase.
       0.634
SFQ37781.1
solute:Na+ symporter, SSS family; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
       0.627
SFQ11724.1
ATP-dependent RNA helicase RhlE; Belongs to the DEAD box helicase family.
    
 
 0.515
SFQ37928.1
Glycosyl hydrolases family 39.
 
     0.515
SFQ51176.1
ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family.
    
 
 0.515
Your Current Organism:
Parafilimonas terrae
NCBI taxonomy Id: 1465490
Other names: DSM 28286, Filimonas sp. 5GHs7-2, KACC 17343, P. terrae, Parafilimonas terrae Kim et al. 2014, strain 5GHs7-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.