STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ44104.1Starch-binding associating with outer membrane. (616 aa)    
Predicted Functional Partners:
SFQ44115.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.933
SFQ44094.1
F5/8 type C domain-containing protein.
 
  
  0.852
SFQ41479.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.849
SFP67977.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.813
SFP52163.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.787
SFQ41454.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.769
SFQ44070.1
Peptidase.
 
     0.767
SFQ55303.1
CarboxypepD_reg-like domain-containing protein.
  
 
   0.740
SFP68003.1
Starch-binding associating with outer membrane.
  
     0.738
SFQ23730.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.716
Your Current Organism:
Parafilimonas terrae
NCBI taxonomy Id: 1465490
Other names: DSM 28286, Filimonas sp. 5GHs7-2, KACC 17343, P. terrae, Parafilimonas terrae Kim et al. 2014, strain 5GHs7-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.