STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ52777.1Protein N-acetyltransferase, RimJ/RimL family. (169 aa)    
Predicted Functional Partners:
SFQ52762.1
Hypothetical protein.
       0.682
SFQ52769.1
Putative signal transducing protein.
       0.682
SFQ49464.1
Pimeloyl-ACP methyl ester carboxylesterase.
 
    0.669
rnc
RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.613
SFP71181.1
Glutamate synthase (NADH) large subunit.
   
 
 0.612
SFQ29153.1
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase.
    
  0.600
SFP60072.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
  0.577
SFQ29600.1
Pyruvate/2-oxoglutarate/acetoin dehydrogenase complex, dehydrogenase (E1) component.
    
  0.464
SFQ44034.1
2-oxoisovalerate dehydrogenase E1 component.
    
  0.464
SFQ47943.1
2-oxoisovalerate dehydrogenase E1 component.
    
  0.464
Your Current Organism:
Parafilimonas terrae
NCBI taxonomy Id: 1465490
Other names: DSM 28286, Filimonas sp. 5GHs7-2, KACC 17343, P. terrae, Parafilimonas terrae Kim et al. 2014, strain 5GHs7-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.