STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ55097.1DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain. (231 aa)    
Predicted Functional Partners:
SFQ47566.1
PAS domain S-box-containing protein.
 0.964
SFQ29064.1
PAS/PAC sensor hybrid histidine kinase.
 
 0.959
SFP52973.1
Signal transduction histidine kinase.
  
0.939
SFQ50888.1
Two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR.
  0.928
SFQ00404.1
Two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR.
 0.925
SFP63146.1
His Kinase A (phospho-acceptor) domain-containing protein.
 
  0.921
SFP84045.1
Signal transduction histidine kinase.
 0.886
SFP64813.1
His Kinase A (phospho-acceptor) domain-containing protein.
 
 
 0.877
SFQ40149.1
Signal transduction histidine kinase.
 
  0.866
SFQ29812.1
His Kinase A (phospho-acceptor) domain-containing protein.
 
 0.862
Your Current Organism:
Parafilimonas terrae
NCBI taxonomy Id: 1465490
Other names: DSM 28286, Filimonas sp. 5GHs7-2, KACC 17343, P. terrae, Parafilimonas terrae Kim et al. 2014, strain 5GHs7-2
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