STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL91873.1HlyD family secretion protein. (328 aa)    
Predicted Functional Partners:
SDL91772.1
ABC-2 type transport system permease protein.
  
 0.971
SDL91811.1
ABC-2 type transport system ATP-binding protein.
  
 0.955
SDL91839.1
ABC-2 type transport system ATP-binding protein.
  
 0.955
SDM35137.1
Outer membrane protein TolC.
 
 0.904
SDN32605.1
Type I secretion outer membrane protein, TolC family.
 
 0.904
SDM79788.1
Outer membrane protein TolC.
 
 0.897
SDM17986.1
Type I secretion outer membrane protein, TolC family.
 
 0.888
SDM94777.1
Outer membrane protein TolC.
 
 0.858
SDM51579.1
RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.723
SDM17505.1
Putative ABC transport system permease protein.
 
  
 0.695
Your Current Organism:
Dendrosporobacter quercicolus
NCBI taxonomy Id: 146817
Other names: ATCC 25974, Clostridium quercicolum, D. quercicolus
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