Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDL49515.1 | SDL49718.1 | SAMN04488502_10148 | SAMN04488502_10153 | Molecular chaperone DnaJ. | Hypothetical protein. | 0.999 |
SDL49515.1 | SDL57607.1 | SAMN04488502_10148 | SAMN04488502_101253 | Molecular chaperone DnaJ. | Elongation factor G. | 0.983 |
SDL49515.1 | SDM24492.1 | SAMN04488502_10148 | SAMN04488502_10342 | Molecular chaperone DnaJ. | Uridine kinase. | 0.987 |
SDL49515.1 | SDM27558.1 | SAMN04488502_10148 | SAMN04488502_103128 | Molecular chaperone DnaJ. | Tetratricopeptide repeat-containing protein. | 0.990 |
SDL49515.1 | SDM74438.1 | SAMN04488502_10148 | SAMN04488502_1079 | Molecular chaperone DnaJ. | Flp pilus assembly protein TadD, contains TPR repeats. | 0.991 |
SDL49515.1 | SDM94999.1 | SAMN04488502_10148 | SAMN04488502_10971 | Molecular chaperone DnaJ. | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. | 0.997 |
SDL49515.1 | dnaK | SAMN04488502_10148 | SAMN04488502_101792 | Molecular chaperone DnaJ. | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.999 |
SDL49515.1 | fusA | SAMN04488502_10148 | SAMN04488502_106185 | Molecular chaperone DnaJ. | Translation elongation factor 2 (EF-2/EF-G); Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. [...] | 0.979 |
SDL49515.1 | grpE | SAMN04488502_10148 | SAMN04488502_101793 | Molecular chaperone DnaJ. | Molecular chaperone GrpE; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP [...] | 0.979 |
SDL49515.1 | htpG | SAMN04488502_10148 | SAMN04488502_104158 | Molecular chaperone DnaJ. | Molecular chaperone HtpG; Molecular chaperone. Has ATPase activity. | 0.997 |
SDL49718.1 | SDL49515.1 | SAMN04488502_10153 | SAMN04488502_10148 | Hypothetical protein. | Molecular chaperone DnaJ. | 0.999 |
SDL49718.1 | SDL57607.1 | SAMN04488502_10153 | SAMN04488502_101253 | Hypothetical protein. | Elongation factor G. | 0.406 |
SDL49718.1 | SDM24492.1 | SAMN04488502_10153 | SAMN04488502_10342 | Hypothetical protein. | Uridine kinase. | 0.689 |
SDL49718.1 | SDM27558.1 | SAMN04488502_10153 | SAMN04488502_103128 | Hypothetical protein. | Tetratricopeptide repeat-containing protein. | 0.993 |
SDL49718.1 | SDM74438.1 | SAMN04488502_10153 | SAMN04488502_1079 | Hypothetical protein. | Flp pilus assembly protein TadD, contains TPR repeats. | 0.998 |
SDL49718.1 | SDM94999.1 | SAMN04488502_10153 | SAMN04488502_10971 | Hypothetical protein. | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. | 0.998 |
SDL49718.1 | fusA | SAMN04488502_10153 | SAMN04488502_106185 | Hypothetical protein. | Translation elongation factor 2 (EF-2/EF-G); Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. [...] | 0.406 |
SDL49718.1 | grpE | SAMN04488502_10153 | SAMN04488502_101793 | Hypothetical protein. | Molecular chaperone GrpE; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP [...] | 0.993 |
SDL49718.1 | htpG | SAMN04488502_10153 | SAMN04488502_104158 | Hypothetical protein. | Molecular chaperone HtpG; Molecular chaperone. Has ATPase activity. | 0.998 |
SDL57607.1 | SDL49515.1 | SAMN04488502_101253 | SAMN04488502_10148 | Elongation factor G. | Molecular chaperone DnaJ. | 0.983 |
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