STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL70321.1N-terminal methylation site-containing protein. (140 aa)    
Predicted Functional Partners:
SDL70401.1
Twitching motility protein PilT.
 
   
 0.928
SDL70363.1
Type IV pilus assembly protein PilC.
 
   
 0.912
SDL70250.1
Type IV pilus assembly protein PilM.
 
   
 0.900
SDL60329.1
Hypothetical protein.
  
  
 0.894
SDL70285.1
Leader peptidase (prepilin peptidase) / N-methyltransferase.
 
   
 0.885
SDL60411.1
Hypothetical protein.
  
  
 0.876
SDL70442.1
Type II secretion system protein E (GspE).
 
   
 0.864
SDL60499.1
Type IV pilus assembly protein PilM.
 
   
 0.821
SDL60255.1
Type 4 prepilin peptidase 1 Aspartic peptidase. MEROPS family A24A; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
   
 0.751
SDL60175.1
Type IV pilus assembly protein PilC.
 
   
 0.740
Your Current Organism:
Dendrosporobacter quercicolus
NCBI taxonomy Id: 146817
Other names: ATCC 25974, Clostridium quercicolum, D. quercicolus
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