STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL82365.1Fur family transcriptional regulator, zinc uptake regulator; Belongs to the Fur family. (140 aa)    
Predicted Functional Partners:
SDL82326.1
Zinc transport system substrate-binding protein; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.781
SDL62829.1
Fur family transcriptional regulator, peroxide stress response regulator; Belongs to the Fur family.
  
     0.770
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.741
SDN01457.1
Glutamate synthase (NADPH) GltB3 subunit.
    
 0.731
SDL83449.1
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
   
 0.700
SDM12140.1
Zinc transport system ATP-binding protein.
  
  
 0.643
SDM12168.1
Zinc transport system permease protein.
  
  
 0.636
SDM15759.1
Iron (metal) dependent repressor, DtxR family.
  
  
 0.612
SDM30185.1
Hypothetical protein.
  
    0.597
SDM43558.1
Peroxiredoxin (alkyl hydroperoxide reductase subunit C).
  
  
 0.577
Your Current Organism:
Dendrosporobacter quercicolus
NCBI taxonomy Id: 146817
Other names: ATCC 25974, Clostridium quercicolum, D. quercicolus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.