STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM05061.1Transcriptional regulator, IclR family. (255 aa)    
Predicted Functional Partners:
SDM41352.1
Inhibitor of KinA.
  
    0.826
SDM41466.1
Inhibitor of KinA.
  
    0.826
SDN11455.1
Allophanate hydrolase subunit 1.
  
    0.826
SDM15620.1
acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.783
SDM41392.1
Biotin-dependent carboxylase uncharacterized domain-containing protein.
  
    0.758
SDM41500.1
Antagonist of KipI.
  
    0.758
SDN11422.1
Biotin-dependent carboxylase uncharacterized domain-containing protein.
  
    0.758
SDL56229.1
Acetaldehyde dehydrogenase /alcohol dehydrogenase AdhE; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
    
 0.722
ackA
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
     
 0.678
SDN27007.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.664
Your Current Organism:
Dendrosporobacter quercicolus
NCBI taxonomy Id: 146817
Other names: ATCC 25974, Clostridium quercicolum, D. quercicolus
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