STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM36714.1Putative spermidine/putrescine transport system substrate-binding protein. (361 aa)    
Predicted Functional Partners:
SDM36663.1
Putative spermidine/putrescine transport system permease protein.
 
 
  0.796
potA-2
Putative spermidine/putrescine transport system ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
 
 0.766
SDM36625.1
Putative spermidine/putrescine transport system permease protein.
 
  
  0.762
SDM06846.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
   
   0.651
SDM11699.1
Two-component system, sensor histidine kinase YesM.
   
   0.633
SDM36759.1
enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
       0.628
SDM36789.1
CoA:oxalate CoA-transferase; Belongs to the CoA-transferase III family.
       0.611
SDL63569.1
iron(III) transport system substrate-binding protein.
  
     0.604
SDM16236.1
Hypothetical protein.
   
  
 0.583
SDM27684.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
  
  
  0.583
Your Current Organism:
Dendrosporobacter quercicolus
NCBI taxonomy Id: 146817
Other names: ATCC 25974, Clostridium quercicolum, D. quercicolus
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