STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM54096.1Amidohydrolase; Belongs to the peptidase M20A family. (372 aa)    
Predicted Functional Partners:
SDM54134.1
Muramoyltetrapeptide carboxypeptidase.
     0.905
SDM56917.1
Aminobenzoyl-glutamate utilization protein A.
 
     0.700
SDN01457.1
Glutamate synthase (NADPH) GltB3 subunit.
    
  0.597
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
    
 0.565
SDM63254.1
Phosphoribosylformylglycinamidine synthase.
    
  0.552
SDM54179.1
Oligopeptide transport system substrate-binding protein.
  
    0.525
SDM54216.1
Beta-lactamase class A.
       0.503
SDM49390.1
Hypothetical protein.
   
 
  0.500
SDM52983.1
N-acyl-D-amino-acid deacylase.
 
     0.493
SDM22898.1
N-acyl-D-amino-acid deacylase.
 
     0.492
Your Current Organism:
Dendrosporobacter quercicolus
NCBI taxonomy Id: 146817
Other names: ATCC 25974, Clostridium quercicolum, D. quercicolus
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